Most missions have a number of Bones hidden in them. Find every bone to unlock this achievement. A good tip is to press while playing to go into spirit form. You can them look around the entire level and find out where all the bones are hidden. Just make sure to get all the bones before you complete all objectives.
Bones are only in the 8 main Realms. There are none in the Final Realm. In the last level in the Realm of the Flappers, you should get the achievement if you made sure to get all of them in each level before moving on.
If you replay a level to get something you missed, you must finish the level or the game will not save your progress.